latex.cph
LaTeX Representation of a Fitted Cox Model
Creates a file containing a LaTeX representation of the fitted model.
- Keywords
- models, regression, character, survival, interface
Usage
# S3 method for cph
latex(object, title,
file='',
append=FALSE, surv=TRUE, maxt=FALSE, which=NULL, varnames, columns=65,
inline=FALSE, before=if(inline)"" else "& &", after="", dec=3,
pretrans=TRUE, caption, digits=.Options$digits, size="",
…) # for cph fit# S3 method for lrm
latex(object, title, file, append, which, varnames,
columns, inline, before, after, pretrans, caption,
digits=.Options$digits, size="", …) # for lrm fit
# S3 method for ols
latex(object, title, file, append, which, varnames,
columns, inline, before, after, pretrans, caption,
digits=.Options$digits, size="", …) # ols fit
# S3 method for orm
latex(object, title, file, append, which, varnames,
columns, inline, before, after, pretrans, caption,
digits=.Options$digits, size="", intercepts=nrp < 10, …) # for orm fit
# S3 method for pphsm
latex(object, title, file, append, which=NULL, varnames,
columns, inline, before, after, pretrans, caption,
digits=.Options$digits, size="", …) # pphsm fit
# S3 method for psm
latex(object, title, file, append, which=NULL, varnames,
columns, inline, before, after, pretrans, caption,
digits=.Options$digits, size="", …) # psm fit
Arguments
- object
a fit object created by a
rms
fitting function.- title
ignored
- file,append
see
latex.default
. Defaults to the console. When usinghtml/markdown,file
is ignored.- surv
if
surv=TRUE
was specified tocph
, the underlying survival probabilities fromobject$surv.summary
will be placed in a table unlesssurv=FALSE
.- maxt
if the maximum follow-up time in the data (
object$maxtime
) exceeds the last entry inobject$surv.summary
, underlying survival estimates atobject$maxtime
will be added to the table ifmaxt=TRUE
.- which,varnames,columns,inline,before,dec,pretrans
see
latex.default
- after
if not an empty string, added to end of markup if
inline=TRUE
- caption
a character string specifying a title for the equation to be centered and typeset in bold face. Default is no title.
- digits
see latexrms
- size
a LaTeX size to use, without the slash. Default is the prevailing size
- intercepts
for
orm
fits. Default is to print intercepts if they are fewer than 10 in number. Set toTRUE
orFALSE
to force.- …
ignored
Value
the name of the created file, with class c("latex","file")
. This
object works with latex viewing and printing commands in Hmisc.
See Also
Examples
# NOT RUN {
units(ftime) <- "Day"
f <- cph(Surv(ftime, death) ~ rcs(age)+sex, surv=TRUE, time.inc=60)
w <- latex(f, file='f.tex') #Interprets fitted model and makes table of S0(t)
#for t=0,60,120,180,...
w #displays image, if viewer installed and file given above
latex(f) # send LaTeX code to the console for knitr
options(prType='html')
latex(f) # for use with knitr and R Markdown using MathJax
# }