NucleotideDistr-class

newNuctleotideDistr

distribs

getDistr


An S4 class that inherits from <code>eSet</code> and holds all the numeric distributions of functions defined over the genome. 
The values may include coverage, splicing, fold change, etc. for a region defined by 
genomic coordinates. 


classes

The rnaSeqMap library provides classes and functions to
analyze the RNA-sequencing data using the coverage profiles in
multiple samples at a time

Michal Okoniewski

rnaSeqMap

rnaSeq secondary analyses

NucleotideDistr-class function

Objects of this class contain (at least) the following list components: <code>chr</code>: numeric matrix containing the read counts. <code>start</code>: data.frame containing the library size and group labels. <code>end</code>: data.frame containing the library size and group labels. <code>strand</code>: data.frame containing the library size and group labels. <code>start</code>: data.frame containing the library size and group labels. 

Slots/List Components

 <code>distribs</code> gives the matrix of distributions from <code>assayData</code> <code>getDistr</code> gives a single distributions from <code>assayData</code> as a vector <code>newNuctleotideDistr (distribs, chr, start, end, strand, type="UNKNOWN", phenoData=NULL, featureData=NULL)</code> constructor from a matrix of data and chromosome coordinates.

Methods

An S4 class that inherits from <code>eSet</code> and holds all the numeric distributions of functions defined over the genome. 
The values may include coverage, splicing, fold change, etc. for a region defined by 
genomic coordinates.

NucleotideDistr-class: Numeric distributions by nucleotide - class

Description

Arguments

Slots/List Components

Methods

See Also