rnaSeqMap (version 2.30.0)

addBamData: addBamData - getting sample data from BAM file.

Description

Add data from experimental samples stored in BAM file.

Usage

addBamData(rs, file, exp, phenoDesc=NULL)

Arguments

rs

SeqReads object to modify

file

BAM file to read

exp

Numbers of sample slot in the object

phenoDesc

A vector to add to phenoData

Value

SeqReads object with samples added from the BAM files. List of BAM files comes from the covdesc. The covdesc content becomes phenoData of the object.

Examples

#  if (xmapConnected())  
#  {
#    rs <- newSeqReads(1,1,20000,1)
#    rs <- addBamData(rs,1:3)
#  }