rnaSeqMap (version 2.30.0)

buildDESeq: buildDESeq - create CountDataSet

Description

Creates CountDataSet from the data in the database using the list of genes supplied - for further analysis with DESeq

Usage

buildDESeq(genes,exps,conds=NULL)

Arguments

genes

vector of Ensembl gene IDs

exps

vector of experiments

conds

Vector of experimental condition descriptions for the samples

Value

object filled with the data of gene-level counts of reads

See Also

buildDGEList

Examples

#  if (xmapConnected())  
#  {
#    data(sample_data_rnaSeqMap)
#    gg <- names(rs.list)
#    cds <- buildDESeq(gg,1:6, c("a","b","b","a","a","b"))

# }