rnaSeqMap (version 2.30.0)

gRanges2CamelMeasures: Genomic plots based upon NucleotideDistr objects

Description

Various plots of genomic coverage for data from NucleotideDistr objects

Usage

gRanges2CamelMeasures(gR, cvd,  sample.idx1, sample.idx2, sums=NULL, progress=NULL)
allCamelMeasuresForRegion(ch, st, en, str, cvd, sample.idx1, sample.idx2, sums=NULL)

Arguments

ch

chromosome name

st

genomic start

en

genomic end

str

strand

cvd

name of the file with BAM description - covdesc

gR

GenomicRanges object to use as a set of genomic regions to query

sample.idx1,sample.idx2

sample indices

sums

the vector of sums for normalization

progress

every how many regions print a dot for progress indicator

Examples

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