rnaSeqMap (version 2.30.0)

normalizations: Normalization Methods

Description

Various normalization methods.

Usage

standarizationNormalize(nd) 
min_maxNormalize(nd)
densityNormalize(nd)
globalCountsNormalize(nd, sums)

Arguments

nd

nucleotide distribution object

sums

sum of reads in a sequencing sample

Examples

# if (xmapConnected())
#  {
#  s <- newSeqReads('chr2', 220238268, 220254744, -1)
#  f <- c("test1.bam", "test2.bam", "test3.bam", "test4.bam", "test5.bam")
#  ff <- sapply(f, function(x) system.file("extdata", x, package = "rnaSeqMap"))
#  rs <- getBamData(rs, 1:5, files = ff)    	
#  nd <- getCoverageFromRS(rs, 1:5)
#  min_maxNormalize(nd)
#  }