rnaSeqMap (version 2.30.0)

parseGff3: parseGff3 - parsing gff3 file format

Description

Parses gff3 file into genes, transcripts and exons.

Usage

parseGff3(filegff, fileg="genes.txt", filet="transcripts.txt", filee="exons.txt", nofiles=FALSE)

Arguments

filegff

Input file in GFF3 format

fileg

Filename for output: genes

filet

Filename for output: transcripts

filee

Filename for output: exons

nofiles

Flag: just optput list, no files

Value

List with elements "genes", "transcripts", "exons" with appropriate tables.

Examples

#  if (xmapConnected())  
#  {
#     parseGff3("Athaliana.gff3")
#  }