rnaSeqMap (version 2.30.0)

regionCoverage: regionCoverage

Description

Finds all the reads for a genomic range

Usage

regionCoverage(chr, start, end, strand, ex, db = "FALSE" )

Arguments

chr

Chromosome

start

Start of the region on a chromosome

end

End of the region on a chromosome

strand

Genome strand: 1 or -1

ex

experiment

db

Use database (SQL) implementation of the algorithm

Value

NucleotideDistr

Examples

#  if (xmapConnected())  
#  {
#   tmp <- regionCoverage( 1, 10000, 20000, 1,3)
#  }