Returns a dataframe with results of the analysis for a RoarDataset object
or a RoarDatasetMultipleAPA object
Method to check how many cores are used by a roar analysis - right now not useful
Creates a RoarDataset Returns a dataframe with results of the analysis for a RoarDataset RoarDatasetMultipleAPA
Computes m/M and roar values
Counts reads falling over PRE/POST portions of the given transcripts
Returns a dataframe with results of the analysis for a RoarDataset object
or a RoarDatasetMultipleAPA object
Returns a dataframe with results of the analysis for a RoarDataset RoarDatasetMultipleAPA
Computes pvalues (Fisher test) on the read counts in this roar analysis
Computes pvalues (Fisher test) on the read counts in this roar analysis
Creates a RoarDataset Private/inner/helper method to combine pvalues of independent test with the Fisher method
Private/inner/helper method to get average counts across samples
Returns a dataframe with results of the analysis for a RoarDataset
or a RoarDatasetMultipleAPA object
Private/inner/helper method to perform Fisher test
Private/inner/helper method to check the order of the invoked analysis methods
Class "RoarDataset"
RoarDatasetMultipleAPAFromFiles
Identify differential APA usage from RNA-seq alignments
Returns a dataframe with results of the analysis for a RoarDataset RoarDatasetMultipleAPA
RoarDatasetMultipleAPA-class
Class "RoarDatasetMultipleAPA"