plot.pcaCoDa

Provides a screeplot and biplot for (robust) compositional principal components analysis.

aplot

Methods for analysis of compositional data including robust
methods (<doi:10.1007/978-3-319-96422-5>), imputation of missing values (<doi:10.1016/j.csda.2009.11.023>), methods to replace
rounded zeros (<doi:10.1080/02664763.2017.1410524>, <doi:10.1016/j.chemolab.2016.04.011>, <doi:10.1016/j.csda.2012.02.012>),
count zeros (<doi:10.1177/1471082X14535524>),
methods to deal with essential zeros (<doi:10.1080/02664763.2016.1182135>), (robust) outlier
detection for compositional data, (robust) principal component analysis for
compositional data, (robust) factor analysis for compositional data, (robust)
discriminant analysis for compositional data (Fisher rule), robust regression
with compositional predictors, functional data analysis (<doi:10.1016/j.csda.2015.07.007>) and p-splines (<doi:10.1016/j.csda.2015.07.007>),
contingency (<doi:10.1080/03610926.2013.824980>)
and compositional tables (<doi:10.1111/sjos.12326>, <doi:10.1111/sjos.12223>, <doi:10.1080/02664763.2013.856871>)
and (robust) Anderson-Darling normality tests for
compositional data as well as popular log-ratio transformations (addLR, cenLR,
isomLR, and their inverse transformations). In addition, visualisation and
diagnostic tools are implemented as well as high and low-level plot functions
for the ternary diagram.

Matthias Templ

robCompositions

Compositional Data Analysis

Karel Hron

Peter Filzmoser

Kamila Facevicova

Petra Kynclova

Jan Walach

Veronika Pintar

Jiajia Chen

Dominika Miksova

Bernhard Meindl

Alessandra Menafoglio

Alessia Di Blasi

Federico Pavone

Nikola Stefelova

Gianluca Zeni

Roman Wiederkehr

plot.pcaCoDa function

<dl><dt>x</dt>
<dd>object of class &#8216;pcaCoDa&#8217;</dd>
<dt>y</dt>
<dd>...</dd>
<dt>...</dt>
<dd>...</dd>
<dt>which</dt>
<dd>an integer between 1 and 3. Produces a screeplot (1), or a biplot using stats biplot.prcomp function (2), or a biplot using ggfortify's autoplot function (3).</dd>
<dt>choices</dt>
<dd>principal components to plot by number</dd></dl>

Arguments

Author

Plot method — plot.pcaCoDa

<dl>

<dt>x</dt>
<dd>object of class &#8216;pcaCoDa&#8217;</dd>


<dt>y</dt>
<dd>...</dd>


<dt>...</dt>
<dd>...</dd>


<dt>which</dt>
<dd>an integer between 1 and 3. Produces a screeplot (1), or a biplot using stats biplot.prcomp function (2), or a biplot using ggfortify's autoplot function (3).</dd>


<dt>choices</dt>
<dd>principal components to plot by number</dd>

</dl>

Plot method

plot.pcaCoDa: Plot method

Description

Usage

Value

Arguments

Author

References

See Also

Examples