check_tidy_omic

Check a tidy omic dataset for consistency between the data and design and
 validate that the dataset follows the <code>tidy_omic</code>/<code>tomic</code>
 specification.

Represents high-dimensional data as tables of features, samples and measurements, and a design list for tracking the meaning of individual variables. Using this format, filtering, normalization, and other transformations of a dataset can be carried out in a flexible manner. 'romic' takes advantage of these transformations to create interactive 'shiny' apps for exploratory data analysis such as an interactive heatmap.

Sean Hackett

romic

R for High-Dimensional Omic Data

Calico Life Sciences LLC 

check_tidy_omic function

<dl><dt>tidy_omic</dt>
<dd>an object of class tidy_omic produced by
<code>create_tidy_omic</code></dd>
<dt>fast_check</dt>
<dd>if TRUE then skip some checks which are slow and that are
generally only needed when a <code>tomic</code> object is first created.</dd></dl>

Arguments

Check Tidy Omic — check_tidy_omic

<dl>

<dt>tidy_omic</dt>
<dd>an object of class tidy_omic produced by
<code>create_tidy_omic</code></dd>


<dt>fast_check</dt>
<dd>if TRUE then skip some checks which are slow and that are
generally only needed when a <code>tomic</code> object is first created.</dd>

</dl>

check_tidy_omic: Check Tidy Omic

Description

Usage

Value

Arguments