check_tomic

Check a tidy or triple 'omic object for common pathologies, such as a
 mismatch between data and schema and non-uniqueness of primary keys.

Represents high-dimensional data as tables of features, samples and measurements, and a design list for tracking the meaning of individual variables. Using this format, filtering, normalization, and other transformations of a dataset can be carried out in a flexible manner. 'romic' takes advantage of these transformations to create interactive 'shiny' apps for exploratory data analysis such as an interactive heatmap.

Sean Hackett

romic

R for High-Dimensional Omic Data

Calico Life Sciences LLC 

check_tomic function

<dl><dt>tomic</dt>
<dd>Either a <code>tidy_omic</code> or <code>triple_omic</code> object</dd>
<dt>fast_check</dt>
<dd>if TRUE then skip some checks which are slow and that are
generally only needed when a <code>tomic</code> object is first created.</dd></dl>

Arguments

Check T*Omic — check_tomic

<dl>

<dt>tomic</dt>
<dd>Either a <code>tidy_omic</code> or <code>triple_omic</code> object</dd>


<dt>fast_check</dt>
<dd>if TRUE then skip some checks which are slow and that are
generally only needed when a <code>tomic</code> object is first created.</dd>

</dl>

check_tomic: Check T*Omic

Description

Usage

Value

Arguments

Examples