get_tomic_table

Extract one of the specific tables from a tomic object

Represents high-dimensional data as tables of features, samples and measurements, and a design list for tracking the meaning of individual variables. Using this format, filtering, normalization, and other transformations of a dataset can be carried out in a flexible manner. 'romic' takes advantage of these transformations to create interactive 'shiny' apps for exploratory data analysis such as an interactive heatmap.

Sean Hackett

romic

R for High-Dimensional Omic Data

Calico Life Sciences LLC 

get_tomic_table function

<dl><dt>tomic</dt>
<dd>Either a <code>tidy_omic</code> or <code>triple_omic</code> object</dd>
<dt>table_type</dt>
<dd>The type of table to extract from the <code>tomic</code> object.<dl>
 <dt>tidy</dt>
<dd>one row per measurements with feature and sample attributes added. Equivalent to the $data field of a tidy omic object</dd></dl></dd> <dt>measurements</dt>
<dd>one row per measurements defined a feature and sample foreign key. Equivalent to the $measurements field of a triple omic object</dd> <dt>features</dt>
<dd>one row per feature defined by a feature primary key. Equivalent to the $features field of a triple omic object</dd> <dt>samples</dt>
<dd>one row per sample defined by a sample primary key. Equivalent to the $samples field of a triple omic object</dd>
</dl>

Arguments

Get Tomic Table — get_tomic_table

<dl>

<dt>tomic</dt>
<dd>Either a <code>tidy_omic</code> or <code>triple_omic</code> object</dd>


<dt>table_type</dt>
<dd>The type of table to extract from the <code>tomic</code> object.<dl>
 <dt>tidy</dt>
<dd>one row per measurements with feature and sample attributes added. Equivalent to the $data field of a tidy omic object</dd>

 <dt>measurements</dt>
<dd>one row per measurements defined a feature and sample foreign key. Equivalent to the $measurements field of a triple omic object</dd>

 <dt>features</dt>
<dd>one row per feature defined by a feature primary key. Equivalent to the $features field of a triple omic object</dd>

 <dt>samples</dt>
<dd>one row per sample defined by a sample primary key. Equivalent to the $samples field of a triple omic object</dd>


</dl></dd>

</dl>

get_tomic_table: Get Tomic Table

Description

Usage

Value

Arguments

Examples