tomic_to_matrix

Convert a T*Omic object to a feature x sample matrix matching the feature
and sample ordering of a Triple Omic object.

Represents high-dimensional data as tables of features, samples and measurements, and a design list for tracking the meaning of individual variables. Using this format, filtering, normalization, and other transformations of a dataset can be carried out in a flexible manner. 'romic' takes advantage of these transformations to create interactive 'shiny' apps for exploratory data analysis such as an interactive heatmap.

Sean Hackett

romic

R for High-Dimensional Molecular Data

Calico Life Sciences LLC 

tomic_to_matrix function

<dl><dt>tomic</dt>
<dd>Either a <code>tidy_omic</code> or <code>triple_omic</code> object</dd>
<dt>value_var</dt>
<dd>measurement variable to use for the matrix</dd>
<dt>transpose</dt>
<dd>if TRUE then samples will be stored as rows.
If FALSE (default) then samples will be columns.</dd></dl>

Arguments

Tomic To Matrix — tomic_to_matrix

<dl>

<dt>tomic</dt>
<dd>Either a <code>tidy_omic</code> or <code>triple_omic</code> object</dd>


<dt>value_var</dt>
<dd>measurement variable to use for the matrix</dd>


<dt>transpose</dt>
<dd>if TRUE then samples will be stored as rows.
If FALSE (default) then samples will be columns.</dd>

</dl>

tomic_to_matrix: Tomic To Matrix

Description

Usage

Value

Arguments

Details

Examples