rotl (version 3.0.0)

strip_ott_ids: Strip OTT ids from tip labels

Description

Strip OTT ids from tip labels

Usage

strip_ott_ids(tip_labels, remove_underscores = FALSE)

Arguments

tip_labels

a character vector containing tip labels (most likely the tip.label element from a tree returned by tol_induced_subtree

remove_underscores

logical (defaults to FALSE). If set to TRUE underscores in tip labels are converted to spaces

Value

A character vector containing the contents of tip_labels with any OTT ids removed.

Examples

## Not run: 
# genera <- c("Perdix", "Dendroica", "Cinclus", "Selasphorus", "Struthio")
# tr <- tol_induced_subtree(ott_ids=c(292466, 267845, 666104, 102710))
# tr$tip.label %in% genera
# tr$tip.label <- strip_ott_ids(tr$tip.label)
# tr$tip.label %in% genera## End(Not run)