rphast (version 1.0)

fixStartStop.feat: Fix start and stop signals...

Description

Fix start and stop signals

Usage

fixStartStop.feat(x)

Arguments

x

An object of type feat. CDS regions must be present with type "CDS", and the transcript_id must be indicated in the attribute field. Start and stop codons should have feature type "start_codon" and "stop_codon" (as produced by addSignals.fea

Value

• An object of type feat, in which CDS regions are ensured to include start codons and exclude stop codons, as required by the GTF2 standard.