rphast (version 1.0)

gene.track: Create a gene track...

Description

Create a gene track

Usage

gene.track(x, name, short.label=NULL, col="black", arrow.density=10)

Arguments

x

An object of type feat

name

The name of the track (a character string)

short.label

An optional character string to be displayed in the left hand margin of the track

col

The color to use plotting this track

arrow.density

The number of lines per inch used to denote strand.

Value

• An object of type track which can be plotted with the plot.track function

Details

This function expects a features object. The features which will be plotted are the ones with types "CDS", "exon", or "intron". All other features will be ignored.

See Also

addIntrons.feat to add intron annotations to a features object.