rphast (version 1.0)

write.feat: Writing a features Object

Description

Write a features object to a file in GFF format.

Usage

write.feat(filename, x)

Arguments

filename

The name of the file to write to (will be overwritten)

x

an object of type feat

Examples

seq <- rep("hg18.chr6", 10)
src <- rep("fake_example", 10)
feature <- rep("CDS", 10)
start <- seq(1, 100, by=10)
end <- seq(10, 100, by=10)
f <- feat(seq, src, feature, start, end)
write.feat("test.gff", f)

unlink("test.gff") # clean up