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rphylotastic (version 0.0.4)

taxon_separate_dark_taxa_using_otol: Separate dark from known taxa on OpenTree of Life

Description

Separate dark from known taxa on OpenTree of Life

Usage

taxon_separate_dark_taxa_using_otol(taxon, filters = c("environmental",
  "sp\\.", "cf\\.", "uncultured", "unidentified", " clone", " enrichment"))

Arguments

taxon

A taxon to get all species for

filters

A character vector of strings to exclude

Value

A list containing a vector of dark names, a vector of known names, and fraction.dark

See Also

https://github.com/phylotastic/phylo_services_docs/tree/master/ServiceDescription or the rotl package, another interface to Open Tree of Life