rpyANTs (version 0.0.4)

ants_plot_grid: Plot multiple 'ANTsImage'

Description

R-friendly wrapper function for ants$plot_grid

Usage

ants_plot_grid(
  images,
  shape = NULL,
  slices = 0,
  axes = 2,
  figsize = 1,
  rpad = 0,
  cpad = 0,
  vmin = NULL,
  vmax = NULL,
  colorbar = TRUE,
  cmap = "Greys_r",
  title = "",
  tfontsize = 20,
  title_dx = 0,
  title_dy = 0,
  rlabels = NULL,
  rfontsize = 14,
  rfontcolor = "black",
  rfacecolor = "white",
  clabels = NULL,
  cfontsize = 14,
  cfontcolor = "black",
  cfacecolor = "white",
  filename = NULL,
  dpi = 400,
  transparent = TRUE,
  ...,
  force_agg = FALSE,
  close_figure = TRUE
)

Value

Nothing

Arguments

images

a single 'ANTsImage', list, or nested list of 'ANTsImage'

shape

shape of grid, default is using dimensions of images

slices

length of one or equaling to length of slices, slice number to plot

axes

0 for 'sagittal', 1 for 'coronal', 2 for 'axial'; default is 2

figsize, rpad, cpad, colorbar, cmap, transparent

graphical parameters

vmin, vmax

value threshold for the image

title

title of figure

title_dx, title_dy, tfontsize

controls title margin and size

rlabels, clabels

row and column labels

rfontsize, rfontcolor, rfacecolor, cfontsize, cfontcolor, cfacecolor

row and column font size, color, and background color

filename, dpi

parameters to save figures

...

passed to ants$plot_grid; make sure all entries are named

force_agg

whether to force graphic engine to use 'agg' device; default is false

close_figure

whether to close figure when returning the function

Examples

if(interactive() && ants_available()) {
  ants <- load_ants()
  image1 <- ants$image_read(ants$get_ants_data('mni'))
  image2 <- image1$smooth_image(1.0)
  image3 <- image1$smooth_image(2.0)
  image4 <- image1$smooth_image(3.0)

  ants_plot_grid(
    list(image1, image2, image3, image4),
    slices = 100, title = "4x1 Grid"
  )

  ants_plot_grid(
    list(image1, image2, image3, image4),
    shape = c(2, 2),
    slices = 100, title = "2x2 Grid"
  )
  ants_plot_grid(
    list(image1, image2, image3, image4),
    shape = c(2, 2), axes = c(0,1,2,1),
    slices = 100, title = "2x2 Grid (diff. anatomical slices)"
  )

}