rpyANTs (version 0.0.4)

halpern_preprocess: 'ANTs' functions for 'Halpern' lab

Description

'ANTs' functions for 'Halpern' lab

Usage

halpern_register_ct_mri(
  fixed,
  moving,
  outprefix,
  fixed_is_ct = TRUE,
  verbose = TRUE
)
halpern_register_template_mri(
  fixed,
  moving,
  outprefix,
  mask = NULL,
  verbose = TRUE
)
halpern_apply_transform_template_mri(roi_folder, outprefix, verbose = TRUE)

Value

A list of result configurations

Arguments

fixed

fixed image as template

moving

moving image that is to be registered into fixed

outprefix

output prefix, needs to be absolute path prefix

fixed_is_ct

whether fixed is 'CT'

verbose

whether to verbose the progress; default is true

mask

mask file for template (skull-stripped)

roi_folder

template 'ROI' or atlas folder in which the image atlases or masks will be transformed into subject's native brain