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rqubic (version 1.18.0)

Qualitative biclustering algorithm for expression data analysis in R

Description

This package implements the QUBIC algorithm introduced by Li et al. for the qualitative biclustering with gene expression data.

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Version

Version

1.18.0

License

GPL-2

Maintainer

Jitao David Zhang

Last Published

February 15th, 2017

Functions in rqubic (1.18.0)

quantileDiscretize

Discretize expression matrix for qualitative biclustering
parseQubicBlocks

Parse QUBIC Command Line Tool Output Files
rqubic-package

Qualitative biclustering algorithm for expression data analysis
generateSeeds-methods

Generate seeds for biclustering
writeQubicInputFile

Write an ExpressionSet object into the file format required by the QUBIC command line tool
quBicluster

Qualitative Biclustering
readBiclusterResults

Import bicluster results from plain text files
combineBiclusts-methods

Combine two or more Biclust objects into one
eSetDimName

Get dimname from an eSet object
fcFilter

Feature-Condition Filter
features-methods

Extract features and conditions
fcFilter-methods

Feature-Condition Filter
QUBICBiclusterSet-class

Class "QUBICBiclusterSet"