Fitting phylogenetic generalized linear models for binary data (0 and 1).
binaryPGLMM(formula, data = list(), phy, s2.init = 0.1,
B.init = NULL, tol.pql = 10^-6, maxit.pql = 200,
maxit.reml = 100)Regression formula.
Data frame to fit the model with.
Phylogenetic tree of type phylo with branch lengths.
Initial variance values for random terms, default is 0.1.
Initial coefficient values for fixed terms, if not provided, will use those from lm.
Tolerance value, default is 10^-6.
The number of iterations, default is 200.
The number of iterations for optim, default is 100.
A large list with class as binaryPGLMM.