transf_phy

Using a fitted phylolm model to transform branch lengths of a phylogeny

Three methods to calculate R2 for models with correlated errors,
including Phylogenetic GLS, Phylogenetic Logistic Regression, Linear Mixed
Models (LMMs), and Generalized Linear Mixed Models (GLMMs). See details in
Ives 2018 <doi:10.1093/sysbio/syy060>.

Anthony Ives

R2s for Regression Models

Daijiang Li

transf_phy function

<dl><dt>phylolmMod</dt>
<dd>A fitted phylolm model.</dd>
<dt>phy</dt>
<dd>A phylogeny with class 'phylo'.</dd></dl>

Arguments

Transform a phylogeny based on a phylolm model — transf_phy

<dl>

<dt>phylolmMod</dt>
<dd>A fitted phylolm model.</dd>


<dt>phy</dt>
<dd>A phylogeny with class 'phylo'.</dd>

</dl>

transf_phy: Transform a phylogeny based on a phylolm model

Description

Usage

Value

Arguments