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rrBLUP (version 4.6)

Ridge Regression and Other Kernels for Genomic Selection

Description

Software for genomic prediction with the RR-BLUP mixed model (Endelman 2011, ). One application is to estimate marker effects by ridge regression; alternatively, BLUPs can be calculated based on an additive relationship matrix or a Gaussian kernel.

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Version

Install

install.packages('rrBLUP')

Monthly Downloads

2,574

Version

4.6

License

GPL-3

Maintainer

Jeffrey Endelman

Last Published

January 28th, 2018

Functions in rrBLUP (4.6)

kin.blup

Genotypic value prediction based on kinship
kinship.BLUP

Genomic prediction by kinship-BLUP (deprecated)
mixed.solve

Mixed-model solver
rrBLUP-package

Ridge regression and other kernels for genomic selection
A.mat

Additive relationship matrix
GWAS

Genome-wide association analysis