Compartment-class: SBML type "Compartment"
Description
A bounded space that contains Species.Instantiation
Objects can be created by calls of the form new("Compartment", ...).Slots
id:- Object of class
"character" uniquely identifying this component. name:- Object of class
"character" naming this component. spatialDimensions:- Object of class
"integer" indicating
the number of dimensions (0, 1, 2, or 3) size:- Object of class
"numeric" indicating the size in
the given units. units:- Object of class
"character" indicating the units
(built-in or the id of a UnitDefinition). outside:- Object of class
"character" identifying the
compartment containing this compartment. constant:- Object of class
"logical" indicating whether
the size changes during simulation. metaId:- Object of class
"character" that is an XML ID
"described" by an RDF resource. This links an SBML element to an RDF
resource. RDF may appear anywhere in an SBML element,
but is usually placed inside the annotation element. notes:- Object of class
"character"
containing user-readable XHTML notes about an element. annotation:- Object of class
"character" containing
additional machine-readable information about an element, usually as RDF,
such as BioPAX. This is where application-specific data belongs. cvTerms:- Object of class
"list" containing
instances of CVTerm associated with this
element. sboTerm:- Object of class
"integer" identifying
a term in the Systems Biology Ontology (SBO).
Extends
Class "SBase", directly.Methods
- id
signature(object = "Compartment"): gets the id slot - id<-
signature(object = "Compartment"): sets the id slot - name
signature(object = "Compartment"): gets the name slot - name<-
signature(object = "Compartment"): sets the name slot - constant
signature(object = "Compartment"): gets the constant slot - constant<-
signature(object = "Compartment"): sets the constant slot - outside
signature(object = "Compartment"): gets the outside slot - outside<-
signature(object = "Compartment"): sets the outside slot - size
signature(object = "Compartment"): gets the size slot - size<-
signature(object = "Compartment"): sets the size slot - units
signature(object = "Compartment"): gets the constant slot - units<-
signature(object = "Compartment"): sets the constant slot - spatialDimensions
signature(object = "Compartment"): gets the spatialDimensions slot - spatialDimensions<-
signature(object = "Compartment"): sets the spatialDimensions slot