Reaction-class: SBML type "Reaction"
Description
Any transformation, transportation or binding process that changes the
quantity of one or more Species.Instantiation
Objects can be created by calls of the form new("Reaction", ...).Slots
id:- Object of class
"character" uniquely identifying this component. name:- Object of class
"character" naming this component. reactants:- Object of class
"list" containing
SpeciesReferences specifying the
Species that are reactants for this
reaction. The names of the list correspond to the IDs of the
species. products:- Object of class
"list" containing
SpeciesReferences specifying the
Species that are products for this
reaction. The names of the list correspond to the IDs of the
species. modifiers:- Object of class
"list" containing
ModifierSpeciesReferences specifying the
Species that are modifiers for this
reaction. The names of the list correspond to the IDs of the
species. kineticLaw:- Object of class
"KineticLaw" that dynamically
defines the rate of the reaction. reversible:- Object of class
"logical" indicating whether
the direction of this reaction is reversible. fast:- Object of class
"logical" indicating whether
this reaction should be considered instantaneous relative to non-fast reactions. metaId:- Object of class
"character" that is an XML ID
"described" by an RDF resource. This links an SBML element to an RDF
resource. RDF may appear anywhere in an SBML element,
but is usually placed inside the annotation element. notes:- Object of class
"character"
containing user-readable XHTML notes about an element. annotation:- Object of class
"character" containing
additional machine-readable information about an element, usually as RDF,
such as BioPAX. This is where application-specific data belongs. cvTerms:- Object of class
"list" containing
instances of CVTerm associated with this
element. sboTerm:- Object of class
"integer" identifying
a term in the Systems Biology Ontology (SBO).
Extends
Class "SBase", directly.Methods
- id
signature(object = "Reaction"): gets the id slot - id<-
signature(object = "Reaction"): sets the id slot - name
signature(object = "Reaction"): gets the name slot - name<-
signature(object = "Reaction"): sets the name slot - fast
signature(object = "Reaction"): gets the fast slot - fast<-
signature(object = "Reaction"): sets the fast slot - kineticLaw
signature(object = "Reaction"): gets the kineticLaw slot - kineticLaw<-
signature(object = "Reaction"): sets the kineticLaw slot - modifiers
signature(object = "Reaction"): gets the modifiers slot - modifiers<-
signature(object = "Reaction"): sets the modifiers slot - products
signature(object = "Reaction"): gets the products slot - products<-
signature(object = "Reaction"): sets the products slot - reactants
signature(object = "Reaction"): gets the reactants slot - reactants<-
signature(object = "Reaction"): sets the reactants slot - reversible
signature(object = "Reaction"): gets the reversible slot - reversible<-
signature(object = "Reaction"): sets the reversible slot