SOSResult-class: SOSResult

Description

A result from simulating an SOSExperiment. Contains the time course for each of the model variables: the Species quantities, Compartment sizes, Parameter values, and Reaction rates.

Arguments

Slots

data:

A "data.frame" containing the time course data. Each row contains the value at a single time point for a single time course. Has the following columns:

sample: A factor, the run number, only exists if there were multiple runs, see SOSDesign.
type: A factor, the SBML element type for the time course, e.g. "species".
id: A factor, the id of the SBML element for the time course.
time: The numeric time value for the time point.
value: The actual numeric value for the time course at that time.

sens:

A "matrix" with results from sensitivity analysis, not yet supported.

Extends

Class "ExperimentResult", directly.

Methods

as.ts: signature(x = "SOSResult"): converts this object to a time course object of class ts. This allows analysis of the results with existing R infrastructure for time course analysis.
compartments: signature(object = "SOSResult"): returns a subset containing only the Compartment size courses.
parameters: signature(object = "SOSResult"): returns a subset containing only the global Parameter value courses.
reactions: signature(object = "SOSResult"): returns a subset containing only the Reaction rate courses.
species: signature(object = "SOSResult"): returns a subset containing only the Species quantity courses.

References