Instantiation
Objects can be created by calls of the form new("SpeciesReference", ...).Slots
stoichiometry:- Object of class
"numeric" indicating the
(static) stoichiometric coefficient. stoichiometryMath:- Object of class
"StoichiometryMath"
that dynamically calculates the stoichiometric coefficient. id:- Object of class
"character" uniquely identifying this component. species:- Object of class
"character" identifying the
Species being referenced. metaId:- Object of class
"character" that is an XML ID
"described" by an RDF resource. This links an SBML element to an RDF
resource. RDF may appear anywhere in an SBML element,
but is usually placed inside the annotation element. notes:- Object of class
"character"
containing user-readable XHTML notes about an element. annotation:- Object of class
"character" containing
additional machine-readable information about an element, usually as RDF,
such as BioPAX. This is where application-specific data belongs. cvTerms:- Object of class
"list" containing
instances of CVTerm associated with this
element. sboTerm:- Object of class
"integer" identifying
a term in the Systems Biology Ontology (SBO).
Extends
Class "SimpleSpeciesReference", directly.
Class "SBase", by class "SimpleSpeciesReference", distance 2.Methods
- stoichiometry
signature(object = "SpeciesReference"): gets the stoichiometry slot - stoichiometry<-
signature(object = "SpeciesReference"): sets the stoichiometry slot - stoichiometryMath
signature(object = "SpeciesReference"): gets the stoichiometryMath slot - stoichiometryMath<-
signature(object = "SpeciesReference"): sets the stoichiometryMath slot