Trigger-class

math,Trigger-method

math<-,Trigger-method

Expresses when an <code>Event</code> should be fired.

classes

Links R to libsbml for SBML parsing, validating output,
provides an S4 SBML DOM, converts SBML to R graph objects.
Optionally links to the SBML ODE Solver Library (SOSLib) for
simulating models.

Michael Lawrence

rsbml

R support for SBML, using libsbml

Trigger-class function

Objects can be created by calls of the form <code>new("Trigger", ...)</code>.

Objects from the Class

<dl>
    <dt><code>math</code>:</dt><dd>Object of class <code>"expression"</code> that evaluates to
    <code>TRUE</code> when the event should be fired.</dd> <dt><code>metaId</code>:</dt><dd>Object of class <code>"character"</code> that is an XML ID
      "described" by an RDF resource. This links an SBML element to an RDF
      resource. RDF may appear anywhere in an SBML element,
      but is usually placed inside the <code>annotation</code> element.</dd> <dt><code>notes</code>:</dt><dd>Object of class <code>"character"</code> 
      containing user-readable XHTML notes about an element. </dd> <dt><code>annotation</code>:</dt><dd>Object of class <code>"character"</code> containing
      additional machine-readable information about an element, usually as RDF,
      such as BioPAX. This is where application-specific data belongs.</dd> <dt><code>cvTerms</code>:</dt><dd>Object of class <code>"list"</code> containing
      instances of <code>CVTerm</code> associated with this
      element.</dd> <dt><code>sboTerm</code>:</dt><dd>Object of class <code>"integer"</code> identifying
      a term in the Systems Biology Ontology (SBO).</dd> </dl> 

Slots

Extends

<dl>
    <dt>math</dt><dd><code>signature(domain = "Trigger")</code>: gets the <code>math</code> slot. </dd> <dt>math&lt;-</dt><dd><code>signature(object = "Trigger")</code>: sets the
      <code>math</code> slot. </dd> </dl> 

Methods

Expresses when an <code><linkS4class>Event</linkS4class></code> should be fired.

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Trigger-class: SBML Type "Trigger"

Description

Arguments

Objects from the Class

Slots

Extends

Methods

References

See Also