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rsnps (version 0.0.5)

Get SNP (Single-Nucleotide Polymorphism) data on the web.

Description

This package is a programmatic interface to various SNP datasets on the web: openSNP, NBCI's dbSNP database, and Broad Institute SNP Annotation and Proxy Search. This package started as a library to interact with openSNP alone, so most functions deal with openSNP.

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Install

install.packages('rsnps')

Monthly Downloads

58

Version

0.0.5

License

CC0

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Repository

https://github.com/ropensci/rsnps

Maintainer

Scott Chamberlain

Last Published

November 13th, 2013

Functions in rsnps (0.0.5)

Download openSNP user files.

phenotypes_byid

Get all known variations and all users sharing that phenotype for one phenotype(-ID).

Split a Vector of Strings Following a Regular Structure

Get genotype data for one or multiple users.

Get genotype data for all users at a particular snp.

Get openSNP users.

Search for SNPs in Linkage Disequilibrium with a set of SNPs

Get all phenotypes, their variations, and how many users have data available for a given phenotype.

Swap Elements in a Vector

Get all phenotypes, their variations, and how many users have data available for a given phenotype.

fetch_genotypes

Download genotype data for a user from 23andme or other repo.

Query NCBI's dbSNP for information on a set of SNPs

Get phenotype data for one or multiple users.

Read in openSNP user files from local storage.

rsnps environment