rstanarm v2.19.3

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Bayesian Applied Regression Modeling via Stan

Estimates previously compiled regression models using the 'rstan' package, which provides the R interface to the Stan C++ library for Bayesian estimation. Users specify models via the customary R syntax with a formula and data.frame plus some additional arguments for priors.

Functions in rstanarm

Name Description
available-models Modeling functions available in rstanarm
as.matrix.stanreg Extract the posterior sample
example_model Example model
family.stanreg family method for stanreg objects
QR-argument The QR argument
bayes_R2.stanreg Compute a Bayesian version of R-squared or LOO-adjusted R-squared for regression models.
available-algorithms Estimation algorithms available for rstanarm models
example_jm Example joint longitudinal and time-to-event model
family.stanmvreg family method for stanmvreg objects
log_lik.stanreg Pointwise log-likelihood matrix
loo_predict.stanreg Compute weighted expectations using LOO
launch_shinystan.stanreg Using the ShinyStan GUI with rstanarm models
adapt_delta adapt_delta: Target average acceptance probability
kfold.stanreg K-fold cross-validation
plot.stanreg Plot method for stanreg objects
model.frame.stanreg model.frame method for stanreg objects
model.matrix.stanreg model.matrix method for stanreg objects
plot.predict.stanjm Plot the estimated subject-specific or marginal longitudinal trajectory
loo.stanreg Information criteria and cross-validation
plot.survfit.stanjm Plot the estimated subject-specific or marginal survival function
formula.stanreg formula method for stanreg objects
model.frame.stanmvreg model.frame method for stanmvreg objects
rstanarm-package Applied Regression Modeling via RStan
prior_summary.stanreg Summarize the priors used for an rstanarm model
posterior_interval.stanreg Posterior uncertainty intervals
se Extract standard errors
priors Prior distributions and options
posterior_predict.stanreg Draw from posterior predictive distribution
posterior_linpred.stanreg Posterior distribution of the linear predictor
predictive_error.stanreg In-sample or out-of-sample predictive errors
print.stanreg Print method for stanreg objects
get_y Extract X, Y or Z from a stanreg object
stan_polr Bayesian ordinal regression models via Stan
neg_binomial_2 Family function for negative binomial GLMs
pairs.stanreg Pairs method for stanreg objects
nobs.stanmvreg Methods for stanreg objects
rstanarm-deprecated Deprecated functions
stanmvreg-methods Methods for stanmvreg objects
rstanarm-datasets Datasets for rstanarm examples
posterior_traj Estimate the subject-specific or marginal longitudinal trajectory
posterior_survfit Estimate subject-specific or standardised survival probabilities
print.survfit.stanjm Generic print method for survfit.stanjm objects
stanreg-objects Fitted model objects
pp_validate Model validation via simulation
predictive_interval.stanreg Predictive intervals
pp_check.stanreg Graphical posterior predictive checks
stan_gamm4 Bayesian generalized linear additive models with optional group-specific terms via Stan
stan_aov Bayesian regularized linear models via Stan
stan_clogit Conditional logistic (clogit) regression models via Stan
terms.stanmvreg terms method for stanmvreg objects
posterior_vs_prior Juxtapose prior and posterior
stan_jm Bayesian joint longitudinal and time-to-event models via Stan
predict.stanreg Predict method for stanreg objects
ps_check Graphical checks of the estimated survival function
stan_betareg Bayesian beta regression models via Stan
reexports Objects exported from other packages
terms.stanreg terms method for stanreg objects
stan_biglm Bayesian regularized linear but big models via Stan
stan_mvmer Bayesian multivariate generalized linear models with correlated group-specific terms via Stan
stan_nlmer Bayesian nonlinear models with group-specific terms via Stan
stanreg_list Create lists of fitted model objects, combine them, or append new models to existing lists of models.
summary.stanreg Summary method for stanreg objects
stan_glmer Bayesian generalized linear models with group-specific terms via Stan
stan_glm Bayesian generalized linear models via Stan
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Vignettes of rstanarm

Name
children/SETTINGS-gg.txt
children/SETTINGS-knitr.txt
children/four_steps.txt
children/stan_glm_priors.txt
mrp-files/interaction.rda
mrp-files/mrp.bib
mrp-files/mrp_sim.rda
mrp-files/plot_data.rda
mrp-files/preference_by_state.rda
mrp-files/sample_alt.rda
mrp-files/state_plot_data.rda
mrp-files/summary_by_poststrat_var.rda
aov.Rmd
betareg.Rmd
binomial.Rmd
continuous.Rmd
count.Rmd
glmer.Rmd
jm.Rmd
lm.Rmd
mrp.Rmd
polr.Rmd
pooling.Rmd
priors.Rmd
rstanarm.Rmd
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