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rsynthbio (version 4.0.0)

transform_baseline_output: Transform Standard Model Output (Internal)

Description

Extracts and combines gene expression data from a standard API response (e.g., gem-1-bulk, gem-1-sc models).

Usage

transform_baseline_output(final_json)

Value

A list with: - metadata: data.frame containing sample metadata - expression: data.frame containing combined gene expression data - latents: data.frame containing embeddings (if requested)

Arguments

final_json

The parsed API response list