rtfbs (version 0.3.15)

gcContent.ms: Get GC content of each sequence in an MS object

Description

Get GC content of each sequence in an MS object

Usage

gcContent.ms(ms)

Arguments

ms

MS object

Value

numeric vector containing GC content of each sequence in ms. GC content is computed as (# of GC bases)/(# of ACGT bases).

Examples

# NOT RUN {
require("rtfbs")
seqs <- ms(seqs=c("AAAA", "ACACACAC", "CGCCG", "ACGTACGTACGT", "CGGGGGGGGGG"),
           paste("fake", 1:5, sep=""))
gcContent.ms(seqs)
# }