is.pointer.ms

MS object containing at least one sequence

Determine if data in MS object is stored in R (by value) or C (by reference).
If data is stored in C, it can be copied to R using the function <code><a rd-options="" href="/link/from.pointer.ms?package=rtfbs&version=0.3.15" data-mini-rdoc="rtfbs::from.pointer.ms">from.pointer.ms</a></code>.
Conversely, if the data is stored in R, it can be copied to C using
the function <code><a rd-options="" href="/link/as.pointer.ms?package=rtfbs&version=0.3.15" data-mini-rdoc="rtfbs::as.pointer.ms">as.pointer.ms</a></code>.

Identifies and scores possible Transcription Factor
Binding Sites and allows for FDR analysis and pruning.  It supports
splitting of sequences based on size or a specified GFF, grouping
by G+C content, and specification of Markov model order.  The heavy
lifting is done in C while all results are made available via R.

Ritika Ramani

rtfbs

Transcription Factor Binding Site Identification Tool

is.pointer.ms function

Determine if data in MS object is stored in R (by value) or C (by reference).
If data is stored in C, it can be copied to R using the function <code><a rd-options='' href='from.pointer.ms'>from.pointer.ms</a></code>.
Conversely, if the data is stored in R, it can be copied to C using
the function <code><a rd-options='' href='as.pointer.ms'>as.pointer.ms</a></code>.

is.pointer.ms: Data in R or C

Description

Usage

Arguments

Value