Format for creating submissions to Copernicus journals.
copernicus_article(
...,
keep_tex = TRUE,
highlight = NULL,
citation_package = "natbib",
md_extensions = c("-autolink_bare_uris", "-auto_identifiers")
)copernicus_journal_abbreviations(journal_name = "*")
An R Markdown output format.
Additional arguments to rmarkdown::pdf_document()
. Note: extra_dependencies
are not
allowed as Copernicus does not support additional packages included via \usepackage{}
.
Keep the intermediate tex file used in the conversion to PDF.
Note that this argument does not control whether to keep the auxiliary
files (e.g., .aux
) generated by LaTeX when compiling .tex
to
.pdf
. To keep these files, you may set options(tinytex.clean =
FALSE)
.
Syntax highlighting style passed to Pandoc.
Supported built-in styles include "default", "tango", "pygments", "kate", "monochrome", "espresso", "zenburn", "haddock", and "breezedark".
Two custom styles are also included, "arrow", an accessible color scheme, and "rstudio", which mimics the default IDE theme. Alternatively, supply a path to a .theme file to use a custom Pandoc style. Note that custom theme requires Pandoc 2.0+.
Pass NULL
to prevent syntax highlighting.
The LaTeX package to process citations, natbib
or biblatex
. Use default
if neither package is to be used,
which means citations will be processed via the command
pandoc-citeproc
.
Markdown extensions to be added or removed from the
default definition of R Markdown. See the rmarkdown_format
for
additional details.
A regular expression to filter the by the journal name, see pattern
in base::grep()
; defaults to *
.
This was adapted from https://publications.copernicus.org/for_authors/manuscript_preparation.html.
An number of required and optional manuscript sections, e.g. acknowledgements
, competinginterests
, or authorcontribution
, must be declared using the respective properties of the R Markdown header - see skeleton file.
Version: Based on copernicus_package.zip
in the version 7.5, 20 October 2023, using copernicus.cls
in version 10.1.9, 16 October 2023.
Copernicus journal abbreviations: You can use the function copernicus_journal_abbreviations()
to get the journal abbreviation for all journals supported by the Copernicus article template.
Important note: The online guidelines by Copernicus are the official resource. Copernicus is not responsible for the community contributions made to support the template in this package. Copernicus converts all typeset TeX files into XML, the expressions and markups have to be highly standardized. Therefore, please keep the following in mind:
Please provide only one figure file for figures with several panels, and please do not use \subfloat
or similar commands.
Please use only commands in which words, numbers, etc. are within braces (e.g. \textrm{TEXT}
instead of \rm TEXT
).
For algorithms, please use the syntax given in template.tex or provide your algorithm as a figure.
Please do not define new commands.
Supported packages (\usepackage{}
) are already integrated in the copernicus.cls
. Please do not insert additional ones in your .tex
file.
If you opt for syntax highlighting for your preprint or other reasons, please do not forget to use
highlight = NULL
for your final file upload once your manuscript was accepted for publication.
Spaces in labels (\label{}
) are not allowed; please make sure that no label name is assigned more than once.
Please do not use \paragraph{}
; only \subsubsection{}
is allowed.
It is not possible to add tables in colour.
Manuscript preparation guidelines for authors. https://publications.copernicus.org/for_authors/manuscript_preparation.html
names(copernicus_journal_abbreviations())
copernicus_journal_abbreviations(journal_name = "Science Data")
if (FALSE) {
library("rmarkdown")
draft("MyArticle.Rmd", template = "copernicus", package = "rticles")
render("MyArticle/MyArticle.Rmd")
}
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