getSample.rtmsBrukerBAFReader

getBrukerBAFSample

Extracts an RTMS sample object (of class <code>rtmsSample</code>) from a single
acquisition Bruker BAF directory opened using an RTMS reader object (of
class <code>rtmsBrukerBAFReader</code>). Because a BAF directory only contains one
spectrum, no additional parameters are needed to specify the spectrum from
which to take the sample.

Quickly imports, processes, analyzes, and visualizes mass-spectrometric
data.  Includes functions for easily extracting specific data and measurements
from large (multi-gigabyte) raw Bruker data files, as well as a set of S3 object
classes for manipulating and measuring mass spectrometric peaks and plotting
peaks and spectra using the 'ggplot2' package.

Nathaniel Twarog

rtms

R Toolkit for Mass Spectrometry

Mary Ashley Rimmer

getSample.rtmsBrukerBAFReader function

<dl><dt>x</dt>
<dd>The BAF reader object</dd>
<dt>peaks</dt>
<dd>A list of peak objects of class <code>rtmsPeak</code></dd>
<dt>...</dt>
<dd>Additional parameters</dd>
<dt>reader</dt>
<dd>An RTMS reader object of class <code>rtmsBrukerBAFReader</code></dd></dl>

Arguments

<ul>
<li><code>getSample(rtmsBrukerBAFReader)</code>: The S3 method <code>getSample</code> for objects
of class <code>rtmsBrukerBAFReader</code>; calls <code>getBrukerBAFSample</code></li>
</ul>

Functions

Extract a sample from a Bruker BAF directory — getSample.rtmsBrukerBAFReader

<dl>

<dt>x</dt>
<dd>The BAF reader object</dd>


<dt>peaks</dt>
<dd>A list of peak objects of class <code>rtmsPeak</code></dd>


<dt>...</dt>
<dd>Additional parameters</dd>


<dt>reader</dt>
<dd>An RTMS reader object of class <code>rtmsBrukerBAFReader</code></dd>

</dl>

getSample.rtmsBrukerBAFReader: Extract a sample from a Bruker BAF directory

Description

Usage

Value

Arguments

Functions