getSampleSet.rtmsBrukerMCFReader

getBrukerMCFSampleSet

Extracts an RTMS sample object (of class <code>rtmsSampleSet</code>) from a multi-
acquisition Bruker MCF directory opened using an RTMS reader object (of
class <code>rtmsBrukerMCFReader</code>). A vector numeric indices is used to identify
which acquisitions the sample set should be extracted from.

Quickly imports, processes, analyzes, and visualizes mass-spectrometric
data.  Includes functions for easily extracting specific data and measurements
from large (multi-gigabyte) raw Bruker data files, as well as a set of S3 object
classes for manipulating and measuring mass spectrometric peaks and plotting
peaks and spectra using the 'ggplot2' package.

Nathaniel Twarog

rtms

R Toolkit for Mass Spectrometry

Mary Ashley Rimmer

getSampleSet.rtmsBrukerMCFReader function

<dl><dt>x</dt>
<dd>The MCF reader object</dd>
<dt>peaks</dt>
<dd>A list of peak objects of class <code>rtmsPeak</code></dd>
<dt>...</dt>
<dd>Additional parameters</dd>
<dt>reader</dt>
<dd>An RTMS reader object of class <code>rtmsBrukerMCFReader</code></dd>
<dt>indices</dt>
<dd>A vector of numeric indices specifying which acquisitions
the sample set should be extracted from</dd></dl>

Arguments

<ul>
<li><code>getSampleSet(rtmsBrukerMCFReader)</code>: The S3 method <code>getSample</code> for objects
of class <code>rtmsBrukerMCFReader</code>; calls <code>getBrukerMCFSampleSet</code></li>
</ul>

Functions

Extract a sample set from a Bruker MCF directory — getSampleSet.rtmsBrukerMCFReader

<dl>

<dt>x</dt>
<dd>The MCF reader object</dd>


<dt>peaks</dt>
<dd>A list of peak objects of class <code>rtmsPeak</code></dd>


<dt>...</dt>
<dd>Additional parameters</dd>


<dt>reader</dt>
<dd>An RTMS reader object of class <code>rtmsBrukerMCFReader</code></dd>


<dt>indices</dt>
<dd>A vector of numeric indices specifying which acquisitions
the sample set should be extracted from</dd>

</dl>

getSampleSet.rtmsBrukerMCFReader: Extract a sample set from a Bruker MCF directory

Description

Usage

Value

Arguments

Functions