Get the total area for given masses for a particular well
getFullScanAreas(scanfile, tic, sample, ejections, peaks, well)A data frame containing the total intensity for rtmsPeak gvien
and each ejection; see Details for column specifics.
A file path to a Sciex raw scan file (extension .wiff.scan) containing the raw data referenced by the .wiff file from which the other parameters were extracted
A total ion chromatogram of the format outputby getTIC() or
getAllTIC()
The particular object from the samples field of the
rtmsWiffReader object, which in this case contains binary offsets into the
.wiff.scan file
An ejection table listing the timing and boundaries of the
total ion chromatogram peaks for all shots in the run, as returned by
measureEjections()
A named list of peak objects of class rtmsPeak
The well (a string) or well index (an integer) to be measured
The table return includes a measurement of total area for each of the mass
transitions listed in sample. It contains one row for each measured shot
each mass transition, with the following columns:
shotorder: The order of the peak within the shots fired during the run
well: The alphanumeric well name of the well from which the shot was
fired
time: The time (in seconds) after the beginning of the run at which the
intensity from the shot was at its peak
massindex: The index of the measured mass transition in the set of masses
in the given sample
mass: The name of the mass transition measured (often a compound name or
id)
area: The intensity area (in counts) for that particular mass transition
from that ejection