GraphTrackLine-class

coerce,character,GraphTrackLine-method

coerce,GraphTrackLine,character-method

coerce,GraphTrackLine,BasicTrackLine-method

coerce,BasicTrackLine,GraphTrackLine-method

A <acronym>UCSC</acronym> track line for graphical tracks.

classes

Extensible framework for interacting with multiple genome 
  browsers (currently UCSC built-in) and manipulating 
  annotation tracks in various formats (currently GFF, BED, bedGraph, BED15,
  WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the
  supported browsers, as well as query and modify the browser state, such as the
  current viewport.

Michael Lawrence

rtracklayer

R interface to genome browsers and their annotation tracks

GraphTrackLine-class function

Objects can be created by calls of the form <code>new("GraphTrackLine",
    ...)</code> or parsed from a character vector track line with
  <code>as(text, "GraphTrackLine")</code> or converted from a
  <code><links4class>BasicTrackLine</links4class></code> using <code>as(basic, "GraphTrackLine")</code>.

Objects from the Class

Class <code>"<links4class>TrackLine</links4class>"</code>, directly.

GraphTrackLine-class: Class "GraphTrackLine"

Description

Arguments

Objects from the Class

Extends

References

See Also