RangesList-methods

chrom,RangesList-method

chrom<-,RangesList-method

Genomic coordinates are often specified in terms of a genome identifier,
  chromosome name, start position and end
  position. The <code>rtracklayer</code> package adds convenience methods to
  <code>RangesList</code> for the manipulation of genomic ranges. The spaces (or
  names) of <code>RangesList</code> are the chromosome names. The
  <code>universe</code> slot indicates the genome, usually as given by UCSC
  (e.g. <dquote>hg18</dquote>).

classes

methods

Extensible framework for interacting with multiple genome 
  browsers (currently UCSC built-in) and manipulating 
  annotation tracks in various formats (currently GFF, BED, bedGraph, BED15,
  WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the
  supported browsers, as well as query and modify the browser state, such as the
  current viewport.

Michael Lawrence

rtracklayer

R interface to genome browsers and their annotation tracks

RangesList-methods function

Genomic coordinates are often specified in terms of a genome identifier,
  chromosome name, start position and end
  position. The <code>rtracklayer</code> package adds convenience methods to
  <code>RangesList</code> for the manipulation of genomic ranges. The spaces (or
  names) of <code>RangesList</code> are the chromosome names. The
  <code>universe</code> slot indicates the genome, usually as given by UCSC
  (e.g. <dQuote>hg18</dQuote>).

RangesList-methods: Ranges on a Genome

Description

Arguments