class:TrackDb

TrackDb-class

$,TrackDb-method

$<-,TrackDb-method

[[,TrackDb,ANY,ANY-method

[[<-,TrackDb,ANY,ANY-method

track<-,TrackDb,ANY-method

The <code>TrackDb</code> class is an abstraction around a database of
  tracks. Implementations include <code><links4class>BrowserSession</links4class></code>
  derivatives and <code><links4class>QuickloadGenome</links4class></code>. Here, a track is
  defined as an interval dataset.

classes

methods

Extensible framework for interacting with multiple genome 
  browsers (currently UCSC built-in) and manipulating 
  annotation tracks in various formats (currently GFF, BED, bedGraph, BED15,
  WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the
  supported browsers, as well as query and modify the browser state, such as the
  current viewport.

Michael Lawrence

rtracklayer

R interface to genome browsers and their annotation tracks

TrackDb-class function

The <code>TrackDb</code> class is an abstraction around a database of
  tracks. Implementations include <code><linkS4class>BrowserSession</linkS4class></code>
  derivatives and <code><linkS4class>QuickloadGenome</linkS4class></code>. Here, a track is
  defined as an interval dataset.

Track Databases

TrackDb-class: Track Databases

Description

Arguments