UCSCData-class

export.bed,UCSCData,characterORconnection-method

export.bed15,UCSCData-method

export.gff,UCSCData,characterORconnection-method

export.ucsc,UCSCData,characterORconnection-method

initialize,UCSCData-method

show,UCSCData-method

coerce,GRanges,UCSCData-method

coerce,UCSCData,GRanges-method

split,UCSCData,ANY-method

split,UCSCData,Vector-method

Each track in <acronym>UCSC</acronym> has an associated
  <code><links4class>TrackLine</links4class></code> that contains metadata on the track.

classes

Extensible framework for interacting with multiple genome 
  browsers (currently UCSC built-in) and manipulating 
  annotation tracks in various formats (currently GFF, BED, bedGraph, BED15,
  WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the
  supported browsers, as well as query and modify the browser state, such as the
  current viewport.

Michael Lawrence

rtracklayer

R interface to genome browsers and their annotation tracks

UCSCData-class function

Each track in <acronym>UCSC</acronym> has an associated
  <code><linkS4class>TrackLine</linkS4class></code> that contains metadata on the track.

Class "UCSCData"

UCSCData-class: Class "UCSCData"

Description

Arguments

See Also