UCSCTrackModes-class

[,UCSCTrackModes,ANY,ANY-method

[<-,UCSCTrackModes,ANY,ANY,ANY-method

A vector of view modes ("hide", "dense", "full",
  "pack", "squish") for each track in a <acronym>UCSC</acronym> view.

classes

Extensible framework for interacting with multiple genome 
  browsers (currently UCSC built-in) and manipulating 
  annotation tracks in various formats (currently GFF, BED, bedGraph, BED15,
  WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the
  supported browsers, as well as query and modify the browser state, such as the
  current viewport.

Michael Lawrence

rtracklayer

R interface to genome browsers and their annotation tracks

UCSCTrackModes-class function

Objects may be created by calls of the form
  <code><a href="/link/ucscTrackModes?package=rtracklayer&version=1.32.0" rd-options="" data-mini-rdoc="rtracklayer::ucscTrackModes">ucscTrackModes</a>(object =
    character(), hide = character(), dense = character(), pack = character(),
    squish = character(), full = character())</code>,
  where <code>object</code> should be a character vector of mode names (with
  its <code>names</code> attribute specifying the corresponding track names).
  The other parameters should contain track names that override the
  modes in <code>object</code>. Later parameters override earlier ones, so,
  for example, if a track is named in <code>hide</code> and <code>full</code>,
  it is shown in the full view mode.

Objects from the Class

Class <code>"<links4class>character</links4class>"</code>, from data part.
Class <code>"<links4class>vector</links4class>"</code>, by class "character", distance 2.

UCSCTrackModes-class: Class "UCSCTrackModes"

Description

Arguments

Objects from the Class

Extends

See Also