UCSCView-class

range,UCSCView-method

range<-,UCSCView-method

visible,UCSCView-method

visible<-,UCSCView-method

An object representing a view of a genome in the
  <acronym>UCSC</acronym> browser.

classes

Extensible framework for interacting with multiple genome 
  browsers (currently UCSC built-in) and manipulating 
  annotation tracks in various formats (currently GFF, BED, bedGraph, BED15,
  WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the
  supported browsers, as well as query and modify the browser state, such as the
  current viewport.

Michael Lawrence

rtracklayer

R interface to genome browsers and their annotation tracks

UCSCView-class function

Calling <code><a href="/link/browserView?package=rtracklayer&version=1.32.0" rd-options="" data-mini-rdoc="rtracklayer::browserView">browserView</a>(session, range = range(object), track
    = trackNames(object), ...)</code>
  creates <code><links4class>BrowserView</links4class></code> of <code>range</code> with visible
  tracks specified by <code>track</code>. <code>track</code> may be an instance of
  <code><links4class>UCSCTrackModes</links4class></code>. Arguments in <code>...</code> should
  match parameters to a
  <code><a href="/link/ucscTrackModes?package=rtracklayer&version=1.32.0" rd-options="" data-mini-rdoc="rtracklayer::ucscTrackModes">ucscTrackModes</a></code> method for creating a
  <code>UCSCTrackModes</code> instance that will be merged with and override
    modes indicated by the <code>track</code> parameter.

Objects from the Class

Class <code>"<links4class>BrowserView</links4class>"</code>, directly.

UCSCView-class: Class "UCSCView"

Description

Arguments

Objects from the Class

Extends

See Also