rubias (version 0.3.4)

a_freq_list: Convert data frame of allele frequencies to nested lists

Description

List-izes the output of reference_allele_counts into a usable format for allelic_list

Usage

a_freq_list(D, pop_level = "collection")

Value

a_freq_list returns a list named by loci, each element of which is a matrix containing that locus's allele count data. Rows in the matrix mark alleles, and columns collections

Arguments

D

the long-format dataframe of counts by collection, locus, and allele, output by reference_allele_counts, to be made into a nested list

Examples

 # Generate a list of individual genotypes by allele from
 # the alewife data's reference allele count tables
 example(reference_allele_counts)
 ale_ac <- a_freq_list(ale_rac)