read_gsi_sim

Note that this relies on a system call to awk. It probably won't work
on Windows.

Implements Bayesian inference for the conditional genetic
stock identification model. It allows inference of mixed fisheries and also
simulation of mixtures to predict accuracy. A full description of the underlying
methods is available in a recently published article in the
Canadian Journal of Fisheries and Aquatic Sciences: <doi:10.1139/cjfas-2018-0016>.

Eric C. Anderson

rubias

Bayesian Inference from the Conditional Genetic Stock
Identification Model

read_gsi_sim function

<dl><dt>path</dt>
<dd>path to the gsi_sim file</dd>
<dt>sample_type</dt>
<dd>should be "reference" or "mixture" depending on what kind of file it is</dd>
<dt>repunits</dt>
<dd>the gsi_sim reporting units file. Has no effect if sample_type is "mixture". If
sample_type is "reference" and this is left as NULL, then all collections will be put in the the
"default_repu".</dd></dl>

Arguments

read a gsi_sim formatted input file into a tibble that rubias can use — read_gsi_sim

<dl>

<dt>path</dt>
<dd>path to the gsi_sim file</dd>


<dt>sample_type</dt>
<dd>should be "reference" or "mixture" depending on what kind of file it is</dd>


<dt>repunits</dt>
<dd>the gsi_sim reporting units file. Has no effect if sample_type is "mixture". If
sample_type is "reference" and this is left as NULL, then all collections will be put in the the
"default_repu".</dd>

</dl>

read_gsi_sim: read a gsi_sim formatted input file into a tibble that rubias can use

Description

Usage

Arguments