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rusda (version 1.0.8)

Interface to USDA Databases

Description

An interface to the web service methods provided by the United States Department of Agriculture (USDA). The Agricultural Research Service (ARS) provides a large set of databases. The current version of the package holds interfaces to the Systematic Mycology and Microbiology Laboratory (SMML), which consists of four databases: Fungus-Host Distributions, Specimens, Literature and the Nomenclature database. It provides functions for querying these databases. The main function is \code{associations}, which allows searching for fungus-host combinations.

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Version

Install

install.packages('rusda')

Monthly Downloads

28

Version

1.0.8

License

GPL (>= 2)

Maintainer

Franz-Sebastian Krah

Last Published

April 2nd, 2016

Functions in rusda (1.0.8)

rusda-package

Interface to USDA Databases
rusda-internal

Internal rusda Functions
literature

Downloads literature from SMML Literature DB
associations

Downloads associations for input species from SMML Fungus-Host DB
substrate

Downloads substrate data from SMML Nomenclature DB
meta_smml

Downloads and evaluate species presence in SMML DBs
synonyms_smml

Downloads synonym data from SMML Nomenclature DB