vert_id
Search by Vertnet occurrence ID
Search by Vertnet occurrence ID
Usage
vert_id(ids, compact = TRUE, messages = TRUE, ...)Arguments
- ids
(character) VertNet IDs, one or more. Required.
- compact
(logical) Return a compact data frame. That is, remove empty columns. Default:
TRUE- messages
(logical) Print progress and information messages. Default:
TRUE- ...
Curl arguments passed on to
HttpClient
Details
VertNet IDs can be a variety of things, some URIs
(i.e., with http://...), while others start with urn.
Internally in this function we filter data to darwin core terms only. To
see what terms we use, do
readLines(
system.file("extdata", "simple_dwc_terms.txt", package = "rvertnet")).
Get in touch with us if these terms need correcting/are out of date. The
terms are from
https://github.com/tdwg/dwc/blob/master/dist/simple_dwc_horizontal.csv
Value
A list, with data frame of search results, and list of metadata
References
Examples
# NOT RUN {
vert_id(ids = "urn:catalog:CM:Herps:116520")
ids <- c("http://arctos.database.museum/guid/MSB:Mamm:56979?seid=1643089",
"urn:catalog:CM:Herps:116520",
"urn:catalog:AUM:Fish:13271")
res <- vert_id(ids)
res$data$occurrenceid
out <- vertsearch(taxon = "aves", state = "california", limit = 5)
(ids <- out$data$occurrenceid)
res <- vert_id(ids)
identical(sort(res$data$occurrenceid), sort(ids))
# }