bioc_r_versions

Get the respective version of R for a given version of 
<a href="https://bioconductor.org/">Bioconductor</a>.

Reproducibility is essential to the progress of research,
yet achieving it remains elusive even in computational fields.
Continuous Integration (CI) platforms offer a powerful way to launch automated workflows
to check and document code, but often require considerable time, effort,
and technical expertise to setup. We therefore developed the rworkflows suite
to make robust CI workflows easy and freely accessible to all R package developers.
rworkflows consists of 1) a CRAN/Bioconductor-compatible R package template,
2) an R package to quickly implement a standardised workflow, and
3) a centrally maintained GitHub Action.

Brian Schilder

rworkflows

Test, Document, Containerise, and Deploy R Packages

bioc_r_versions function

<dl><dt>bioc_version</dt>
<dd>Version of Bioc to return info for.
Can be:<dl>
<dt>"devel"</dt>
<dd>Get the current development version of Bioc.</dd></dl></dd><dt>"release"</dt>
<dd>Get the current release version of Bioc.</dd><dt>&lt;numeric&gt;</dt>
<dd>A specific Bioc version number (e.g. <code>3.16</code>).</dd><dt>NULL</dt>
<dd>Return info for all Bioc versions.</dd>
</dl>
<dt>depth</dt>
<dd>How many levels deep into the R version to include.
For example, is the R version number is "4.2.0", 
the following depths would return:<dl>
<dt><code>depth=NULL</code>: </dt>
<dd>"4.2.0"</dd></dl></dd><dt><code>depth=1</code>: </dt>
<dd>"4"</dd><dt><code>depth=2</code>: </dt>
<dd>"4.2"</dd><dt><code>depth=3</code>: </dt>
<dd>"4.2.0"</dd>

<dt>return_opts</dt>
<dd>Return a character vector of all valid Bioc version names.</dd>

Arguments

Get the respective version of R for a given version of 
<a href='https://bioconductor.org/'>Bioconductor</a>.

Bioconductor / R versions — bioc_r_versions

<dl>

<dt>bioc_version</dt>
<dd>Version of Bioc to return info for.
Can be:<dl>
<dt>"devel"</dt>
<dd>Get the current development version of Bioc.</dd>

<dt>"release"</dt>
<dd>Get the current release version of Bioc.</dd>

<dt>&lt;numeric&gt;</dt>
<dd>A specific Bioc version number (e.g. <code>3.16</code>).</dd>

<dt>NULL</dt>
<dd>Return info for all Bioc versions.</dd>


</dl></dd>


<dt>depth</dt>
<dd>How many levels deep into the R version to include.
For example, is the R version number is "4.2.0", 
the following depths would return:<dl>
<dt><code>depth=NULL</code>: </dt>
<dd>"4.2.0"</dd>

<dt><code>depth=1</code>: </dt>
<dd>"4"</dd>

<dt><code>depth=2</code>: </dt>
<dd>"4.2"</dd>

<dt><code>depth=3</code>: </dt>
<dd>"4.2.0"</dd>


</dl></dd>


<dt>return_opts</dt>
<dd>Return a character vector of all valid Bioc version names.</dd>

</dl>

bioc_r_versions: Bioconductor / R versions

Description

Usage

Value

Arguments

Examples